Index

A

Academic_GCCDataset (class in cogdl.datasets.gcc_data) Accuracy (class in cogdl.utils.evaluator) accuracy() (in module cogdl.utils.evaluator) ACM_GTNDataset (class in cogdl.datasets.gtn_data) ACM_HANDataset (class in cogdl.datasets.han_data) act_attention() (in module cogdl.utils.srgcn_utils) act_map() (in module cogdl.utils.srgcn_utils) act_normalization() (in module cogdl.utils.srgcn_utils) add_args() (cogdl.data.Dataset static method) (cogdl.models.base_model.BaseModel static method) (cogdl.models.emb.deepwalk.DeepWalk static method) (cogdl.models.emb.dgk.DeepGraphKernel static method) (cogdl.models.emb.dngr.DNGR static method) (cogdl.models.emb.gatne.GATNE static method) (cogdl.models.emb.graph2vec.Graph2Vec static method) (cogdl.models.emb.grarep.GraRep static method) (cogdl.models.emb.hin2vec.Hin2vec static method) (cogdl.models.emb.hope.HOPE static method) (cogdl.models.emb.line.LINE static method) (cogdl.models.emb.metapath2vec.Metapath2vec static method) (cogdl.models.emb.netmf.NetMF static method) (cogdl.models.emb.netsmf.NetSMF static method) (cogdl.models.emb.node2vec.Node2vec static method) (cogdl.models.emb.prone.ProNE static method) (cogdl.models.emb.pronepp.ProNEPP static method) (cogdl.models.emb.pte.PTE static method) (cogdl.models.emb.sdne.SDNE static method) (cogdl.models.emb.spectral.Spectral static method) (cogdl.models.nn.agc.AGC static method) (cogdl.models.nn.compgcn.LinkPredictCompGCN static method) (cogdl.models.nn.daegc.DAEGC static method) (cogdl.models.nn.deepergcn.DeeperGCN static method) (cogdl.models.nn.dgi.DGIModel static method) (cogdl.models.nn.diffpool.DiffPool static method) (cogdl.models.nn.disengcn.DisenGCN static method) (cogdl.models.nn.drgat.DrGAT static method) (cogdl.models.nn.drgcn.DrGCN static method) (cogdl.models.nn.dropedge_gcn.DropEdge_GCN static method) (cogdl.models.nn.gat.GAT static method) (cogdl.models.nn.gcn.GCN static method) (cogdl.models.nn.gcnii.GCNII static method) (cogdl.models.nn.gcnmix.GCNMix static method) (cogdl.models.nn.gdc_gcn.GDC_GCN static method) (cogdl.models.nn.gin.GIN static method) (cogdl.models.nn.grace.GRACE static method) (cogdl.models.nn.grand.Grand static method) (cogdl.models.nn.graph_unet.GraphUnet static method) (cogdl.models.nn.graphsage.Graphsage static method) (cogdl.models.nn.gtn.GTN static method) (cogdl.models.nn.han.HAN static method) (cogdl.models.nn.infograph.InfoGraph static method) (cogdl.models.nn.mixhop.MixHop static method) (cogdl.models.nn.mlp.MLP static method) (cogdl.models.nn.mvgrl.MVGRL static method) (cogdl.models.nn.patchy_san.PatchySAN static method) (cogdl.models.nn.ppnp.PPNP static method) (cogdl.models.nn.pprgo.PPRGo static method) (cogdl.models.nn.rgcn.LinkPredictRGCN static method) (cogdl.models.nn.sgc.sgc static method) (cogdl.models.nn.sign.MLP static method) (cogdl.models.nn.sortpool.SortPool static method) (cogdl.models.nn.srgcn.SRGCN static method) (cogdl.wrappers.data_wrapper.graph_classification.GraphClassificationDataWrapper static method) (cogdl.wrappers.data_wrapper.graph_classification.GraphEmbeddingDataWrapper static method) (cogdl.wrappers.data_wrapper.graph_classification.PATCHY_SAN_DataWrapper static method) (cogdl.wrappers.data_wrapper.link_prediction.EmbeddingLinkPredictionDataWrapper static method) (cogdl.wrappers.data_wrapper.node_classification.ClusterWrapper static method) (cogdl.wrappers.data_wrapper.node_classification.GraphSAGEDataWrapper static method) (cogdl.wrappers.data_wrapper.node_classification.M3SDataWrapper static method) (cogdl.wrappers.data_wrapper.node_classification.PPRGoDataWrapper static method) (cogdl.wrappers.data_wrapper.node_classification.SAGNDataWrapper static method) (cogdl.wrappers.data_wrapper.pretraining.GCCDataWrapper static method) (cogdl.wrappers.model_wrapper.clustering.AGCModelWrapper static method) (cogdl.wrappers.model_wrapper.clustering.DAEGCModelWrapper static method) (cogdl.wrappers.model_wrapper.clustering.GAEModelWrapper static method) (cogdl.wrappers.model_wrapper.graph_classification.InfoGraphModelWrapper static method) (cogdl.wrappers.model_wrapper.heterogeneous.HeterogeneousEmbeddingModelWrapper static method) (cogdl.wrappers.model_wrapper.heterogeneous.MultiplexEmbeddingModelWrapper static method) (cogdl.wrappers.model_wrapper.link_prediction.GNNKGLinkPredictionModelWrapper static method) (cogdl.wrappers.model_wrapper.node_classification.CorrectSmoothModelWrapper static method) (cogdl.wrappers.model_wrapper.node_classification.DGIModelWrapper static method) (cogdl.wrappers.model_wrapper.node_classification.GCNMixModelWrapper static method) (cogdl.wrappers.model_wrapper.node_classification.GRACEModelWrapper static method) (cogdl.wrappers.model_wrapper.node_classification.GrandModelWrapper static method) (cogdl.wrappers.model_wrapper.node_classification.M3SModelWrapper static method) (cogdl.wrappers.model_wrapper.node_classification.NetworkEmbeddingModelWrapper static method) (cogdl.wrappers.model_wrapper.node_classification.SelfAuxiliaryModelWrapper static method) (cogdl.wrappers.model_wrapper.node_classification.UnsupGraphSAGEModelWrapper static method) (cogdl.wrappers.model_wrapper.pretraining.GCCModelWrapper static method)

add_data_wrapper_args() (in module cogdl.options) add_dataset_args() (in module cogdl.options) add_model_args() (in module cogdl.options) add_model_wrapper_args() (in module cogdl.options) add_remaining_self_loops() (cogdl.data.Adjacency method) (cogdl.data.Graph method) (in module cogdl.utils.graph_utils) add_reverse_edges() (cogdl.models.nn.compgcn.LinkPredictCompGCN method) add_self_loops() (in module cogdl.utils.graph_utils) adj_pow_x() (cogdl.layers.mixhop_layer.MixHopLayer method) Adjacency (class in cogdl.data) after_pooling_forward() (cogdl.models.nn.diffpool.DiffPool method) AGC (class in cogdl.models.nn.agc) AGCModelWrapper (class in cogdl.wrappers.model_wrapper.clustering) alias_draw() (in module cogdl.utils.utils) alias_setup() (in module cogdl.utils.utils) AmazonDataset (class in cogdl.datasets.gatne) apply_to_device() (cogdl.datasets.gtn_data.GTNDataset method) (cogdl.datasets.han_data.HANDataset method) ArgClass (class in cogdl.utils.utils) AttentionLayer (class in cogdl.layers.han_layer) augment() (cogdl.models.nn.mvgrl.MVGRL method) (cogdl.wrappers.model_wrapper.node_classification.DGIModelWrapper static method) auto_experiment() (in module cogdl.experiments) AutoML (class in cogdl.experiments)

B

BaseEvaluator (class in cogdl.utils.evaluator) BaseModel (class in cogdl.models.base_model) basis_forward() (cogdl.layers.rgcn_layer.RGCNLayer method) Batch (class in cogdl.data) batch_graphs() (in module cogdl.data) batch_max_pooling() (in module cogdl.utils.utils) batch_mean_pooling() (in module cogdl.utils.utils) batch_size (cogdl.data.DataLoader attribute) batch_sum_pooling() (in module cogdl.utils.utils) batched_loss() (cogdl.wrappers.model_wrapper.node_classification.GRACEModelWrapper method) bce_with_logits_loss() (in module cogdl.utils.evaluator) BCEWithLogitsLoss (class in cogdl.utils.evaluator) bdd_forward() (cogdl.layers.rgcn_layer.RGCNLayer method) BidirectionalOneShotIterator (class in cogdl.datasets.kg_data) BlogcatalogDataset (class in cogdl.datasets.matlab_matrix) BondEncoder (class in cogdl.layers.deepergcn_layer) build_args_from_dict() (in module cogdl.utils.utils) build_dataset() (in module cogdl.datasets) build_dataset_from_name() (in module cogdl.datasets) build_dataset_from_path() (in module cogdl.datasets) build_dataset_pretrain() (in module cogdl.datasets) build_model() (cogdl.models.nn.patchy_san.PatchySAN method) (in module cogdl.models) build_model_from_args() (cogdl.models.base_model.BaseModel class method) (cogdl.models.emb.deepwalk.DeepWalk class method) (cogdl.models.emb.dgk.DeepGraphKernel class method) (cogdl.models.emb.dngr.DNGR class method) (cogdl.models.emb.gatne.GATNE class method) (cogdl.models.emb.graph2vec.Graph2Vec class method) (cogdl.models.emb.grarep.GraRep class method) (cogdl.models.emb.hin2vec.Hin2vec class method) (cogdl.models.emb.hope.HOPE class method) (cogdl.models.emb.line.LINE class method) (cogdl.models.emb.metapath2vec.Metapath2vec class method) (cogdl.models.emb.netmf.NetMF class method) (cogdl.models.emb.netsmf.NetSMF class method) (cogdl.models.emb.node2vec.Node2vec class method) (cogdl.models.emb.prone.ProNE class method) (cogdl.models.emb.pronepp.ProNEPP class method) (cogdl.models.emb.pte.PTE class method) (cogdl.models.emb.sdne.SDNE class method) (cogdl.models.emb.spectral.Spectral class method) (cogdl.models.nn.agc.AGC class method) (cogdl.models.nn.compgcn.LinkPredictCompGCN class method) (cogdl.models.nn.daegc.DAEGC class method) (cogdl.models.nn.deepergcn.DeeperGCN class method) (cogdl.models.nn.dgi.DGIModel class method) (cogdl.models.nn.diffpool.DiffPool class method) (cogdl.models.nn.disengcn.DisenGCN class method) (cogdl.models.nn.drgat.DrGAT class method) (cogdl.models.nn.drgcn.DrGCN class method) (cogdl.models.nn.dropedge_gcn.DropEdge_GCN class method) (cogdl.models.nn.gat.GAT class method) (cogdl.models.nn.gcn.GCN class method) (cogdl.models.nn.gcnii.GCNII class method) (cogdl.models.nn.gcnmix.GCNMix class method) (cogdl.models.nn.gdc_gcn.GDC_GCN class method) (cogdl.models.nn.gin.GIN class method) (cogdl.models.nn.grace.GRACE class method) (cogdl.models.nn.grand.Grand class method) (cogdl.models.nn.graph_unet.GraphUnet class method) (cogdl.models.nn.graphsage.Graphsage class method) (cogdl.models.nn.gtn.GTN class method) (cogdl.models.nn.han.HAN class method) (cogdl.models.nn.infograph.InfoGraph class method) (cogdl.models.nn.mixhop.MixHop class method) (cogdl.models.nn.mlp.MLP class method) (cogdl.models.nn.mvgrl.MVGRL class method) (cogdl.models.nn.patchy_san.PatchySAN class method) (cogdl.models.nn.ppnp.PPNP class method) (cogdl.models.nn.pprgo.PPRGo class method) (cogdl.models.nn.rgcn.LinkPredictRGCN class method) (cogdl.models.nn.sgc.sgc class method) (cogdl.models.nn.sign.MLP class method) (cogdl.models.nn.sortpool.SortPool class method) (cogdl.models.nn.srgcn.SRGCN class method)

build_model_path() (in module cogdl.utils.utils) build_topk_ppr_matrix_from_data() (in module cogdl.utils.ppr_utils) build_up() (cogdl.utils.sampling.RandomWalker method)

C

cal_mrr() (in module cogdl.utils.link_prediction_utils) calc_ppr_topk_parallel() (in module cogdl.utils.ppr_utils) cat() (in module cogdl.datasets.tu_data) chebyshev() (cogdl.utils.prone_utils.HeatKernelApproximation method) check_app() (in module cogdl.pipelines) clear() (cogdl.utils.evaluator.Accuracy method) (cogdl.utils.evaluator.BaseEvaluator method) (cogdl.utils.evaluator.MAE method) clone() (cogdl.data.Adjacency method) (cogdl.data.Graph method) cluster_loss() (cogdl.wrappers.model_wrapper.clustering.DAEGCModelWrapper method) ClusterWrapper (class in cogdl.wrappers.data_wrapper.node_classification) coalesce() (in module cogdl.datasets.tu_data) (in module cogdl.utils.graph_utils) cogdl.data module cogdl.datasets module cogdl.datasets.gatne module cogdl.datasets.gcc_data module cogdl.datasets.gtn_data module cogdl.datasets.han_data module cogdl.datasets.kg_data module cogdl.datasets.matlab_matrix module cogdl.datasets.ogb module cogdl.datasets.tu_data module cogdl.experiments module cogdl.layers.deepergcn_layer module cogdl.layers.disengcn_layer module cogdl.layers.gat_layer module cogdl.layers.gcn_layer module cogdl.layers.gcnii_layer module cogdl.layers.gin_layer module cogdl.layers.han_layer module cogdl.layers.mixhop_layer module cogdl.layers.mlp_layer module cogdl.layers.pprgo_layer module cogdl.layers.rgcn_layer module

cogdl.layers.sage_layer module cogdl.layers.saint_layer module cogdl.layers.se_layer module cogdl.layers.sgc_layer module cogdl.models module cogdl.models.base_model module cogdl.options module cogdl.pipelines module cogdl.utils.evaluator module cogdl.utils.graph_utils module cogdl.utils.link_prediction_utils module cogdl.utils.ppr_utils module cogdl.utils.prone_utils module cogdl.utils.sampling module cogdl.utils.srgcn_utils module cogdl.utils.utils module col_indices (cogdl.data.Graph property) col_norm() (cogdl.data.Adjacency method) (cogdl.data.Graph method) CollabDataset (class in cogdl.datasets.tu_data) collate_fn() (cogdl.data.DataLoader static method) (cogdl.datasets.kg_data.TestDataset static method) (cogdl.datasets.kg_data.TrainDataset static method) ColumnUniform (class in cogdl.utils.srgcn_utils) compute_intra() (cogdl.models.nn.agc.AGC method) concat() (cogdl.utils.link_prediction_utils.ConvELayer method) consistency_loss() (cogdl.wrappers.model_wrapper.node_classification.GrandModelWrapper method) construct_sparse() (in module cogdl.utils.ppr_utils) contrastive_loss() (cogdl.wrappers.model_wrapper.node_classification.GRACEModelWrapper method) ConvELayer (class in cogdl.utils.link_prediction_utils) convert_csr() (cogdl.data.Adjacency method) coo2csc() (in module cogdl.utils.graph_utils) coo2csr() (in module cogdl.utils.graph_utils) coo2csr_index() (in module cogdl.utils.graph_utils) CorrectSmoothModelWrapper (class in cogdl.wrappers.model_wrapper.node_classification) count_frequency() (cogdl.datasets.kg_data.TrainDataset static method) cross_entropy_loss() (in module cogdl.utils.evaluator) CrossEntropyLoss (class in cogdl.utils.evaluator) csr2coo() (in module cogdl.utils.graph_utils) csr2csc() (in module cogdl.utils.graph_utils) csr_subgraph() (cogdl.data.Graph method) cumsum() (cogdl.data.Batch method) cycle_index() (in module cogdl.utils.utils)

D

DAEGC (class in cogdl.models.nn.daegc) DAEGCModelWrapper (class in cogdl.wrappers.model_wrapper.clustering) DataLoader (class in cogdl.data) Dataset (class in cogdl.data) dataset (cogdl.data.DataLoader attribute) DatasetPipeline (class in cogdl.pipelines) DatasetStatsPipeline (class in cogdl.pipelines) DatasetVisualPipeline (class in cogdl.pipelines) DBLP_GTNDataset (class in cogdl.datasets.gtn_data) DBLP_HANDataset (class in cogdl.datasets.han_data) DblpNEDataset (class in cogdl.datasets.matlab_matrix) DBLPNetrep_GCCDataset (class in cogdl.datasets.gcc_data) DBLPSnap_GCCDataset (class in cogdl.datasets.gcc_data) DeeperGCN (class in cogdl.models.nn.deepergcn) DeepGraphKernel (class in cogdl.models.emb.dgk) DeepWalk (class in cogdl.models.emb.deepwalk) default_search_space() (in module cogdl.experiments) degrees() (cogdl.data.Adjacency method) (cogdl.data.Graph method) device (cogdl.data.Adjacency property) (cogdl.data.Graph property) (cogdl.models.base_model.BaseModel property)

DGIModel (class in cogdl.models.nn.dgi) DGIModelWrapper (class in cogdl.wrappers.model_wrapper.node_classification) DiffPool (class in cogdl.models.nn.diffpool) DisenGCN (class in cogdl.models.nn.disengcn) DisenGCNLayer (class in cogdl.layers.disengcn_layer) DistMultLayer (class in cogdl.utils.link_prediction_utils) DNGR (class in cogdl.models.emb.dngr) download() (cogdl.data.Dataset method) (cogdl.datasets.gatne.GatneDataset method) (cogdl.datasets.gcc_data.Edgelist method) (cogdl.datasets.gcc_data.GCCDataset method) (cogdl.datasets.gtn_data.GTNDataset method) (cogdl.datasets.han_data.HANDataset method) (cogdl.datasets.kg_data.KnowledgeGraphDataset method) (cogdl.datasets.matlab_matrix.MatlabMatrix method) (cogdl.datasets.matlab_matrix.NetworkEmbeddingCMTYDataset method) (cogdl.datasets.tu_data.TUDataset method) download_url() (in module cogdl.utils.utils) DrGAT (class in cogdl.models.nn.drgat) DrGCN (class in cogdl.models.nn.drgcn) drop_last (cogdl.data.DataLoader attribute) drop_node() (cogdl.models.nn.grand.Grand method) DropEdge_GCN (class in cogdl.models.nn.dropedge_gcn)

E

edge_attr (cogdl.data.Graph property) edge_attr_size (cogdl.data.Dataset property) (cogdl.datasets.ogb.OGBProteinsDataset property) edge_index (cogdl.data.Adjacency property) (cogdl.data.Graph property) edge_subgraph() (cogdl.data.Graph method) edge_types (cogdl.data.Graph property) edge_weight (cogdl.data.Graph property) EdgeAttention (class in cogdl.utils.srgcn_utils) EdgeEncoder (class in cogdl.layers.deepergcn_layer) Edgelist (class in cogdl.datasets.gcc_data) embed() (cogdl.models.nn.dgi.DGIModel method) (cogdl.models.nn.gcn.GCN method) (cogdl.models.nn.grace.GRACE method) (cogdl.models.nn.mvgrl.MVGRL method)

EmbeddingLinkPredictionDataWrapper (class in cogdl.wrappers.data_wrapper.link_prediction) EmbeddingLinkPredictionModelWrapper (class in cogdl.wrappers.model_wrapper.link_prediction) ENZYMES (class in cogdl.datasets.tu_data) eval() (cogdl.data.Graph method) (cogdl.datasets.gcc_data.PretrainDataset.DataList method) eval_step() (cogdl.wrappers.model_wrapper.link_prediction.GNNKGLinkPredictionModelWrapper method) evaluate() (cogdl.utils.evaluator.Accuracy method) (cogdl.utils.evaluator.BaseEvaluator method) (cogdl.utils.evaluator.MAE method) experiment() (in module cogdl.experiments)

F

Facebook_GCCDataset (class in cogdl.datasets.gcc_data) FB13Datset (class in cogdl.datasets.kg_data) FB13SDatset (class in cogdl.datasets.kg_data) FB15k237Datset (class in cogdl.datasets.kg_data) FB15kDatset (class in cogdl.datasets.kg_data) feature_extractor() (cogdl.models.emb.dgk.DeepGraphKernel static method) (cogdl.models.emb.graph2vec.Graph2Vec static method) FlickrDataset (class in cogdl.datasets.matlab_matrix) forward() (cogdl.layers.deepergcn_layer.BondEncoder method) (cogdl.layers.deepergcn_layer.EdgeEncoder method) (cogdl.layers.deepergcn_layer.GENConv method) (cogdl.layers.deepergcn_layer.ResGNNLayer method) (cogdl.layers.disengcn_layer.DisenGCNLayer method) (cogdl.layers.gat_layer.GATLayer method) (cogdl.layers.gcn_layer.GCNLayer method) (cogdl.layers.gcnii_layer.GCNIILayer method) (cogdl.layers.gin_layer.GINLayer method) (cogdl.layers.han_layer.AttentionLayer method) (cogdl.layers.han_layer.HANLayer method) (cogdl.layers.mixhop_layer.MixHopLayer method) (cogdl.layers.mlp_layer.MLP method) (cogdl.layers.pprgo_layer.LinearLayer method) (cogdl.layers.pprgo_layer.PPRGoLayer method) (cogdl.layers.rgcn_layer.RGCNLayer method) (cogdl.layers.sage_layer.SAGELayer method) (cogdl.layers.saint_layer.SAINTLayer method) (cogdl.layers.se_layer.SELayer method) (cogdl.layers.sgc_layer.SGCLayer method) (cogdl.models.base_model.BaseModel method) (cogdl.models.emb.deepwalk.DeepWalk method) (cogdl.models.emb.dgk.DeepGraphKernel method) (cogdl.models.emb.dngr.DNGR method) (cogdl.models.emb.gatne.GATNE method) (cogdl.models.emb.graph2vec.Graph2Vec method) (cogdl.models.emb.grarep.GraRep method) (cogdl.models.emb.hin2vec.Hin2vec method) (cogdl.models.emb.hope.HOPE method) (cogdl.models.emb.line.LINE method) (cogdl.models.emb.metapath2vec.Metapath2vec method) (cogdl.models.emb.netmf.NetMF method) (cogdl.models.emb.netsmf.NetSMF method) (cogdl.models.emb.node2vec.Node2vec method) (cogdl.models.emb.prone.ProNE method) (cogdl.models.emb.pte.PTE method) (cogdl.models.emb.sdne.SDNE method) (cogdl.models.emb.spectral.Spectral method) (cogdl.models.nn.agc.AGC method) (cogdl.models.nn.compgcn.LinkPredictCompGCN method) (cogdl.models.nn.daegc.DAEGC method) (cogdl.models.nn.deepergcn.DeeperGCN method) (cogdl.models.nn.dgi.DGIModel method) (cogdl.models.nn.diffpool.DiffPool method) (cogdl.models.nn.disengcn.DisenGCN method) (cogdl.models.nn.drgat.DrGAT method) (cogdl.models.nn.drgcn.DrGCN method) (cogdl.models.nn.dropedge_gcn.DropEdge_GCN method) (cogdl.models.nn.gat.GAT method) (cogdl.models.nn.gcn.GCN method) (cogdl.models.nn.gcnii.GCNII method) (cogdl.models.nn.gcnmix.GCNMix method) (cogdl.models.nn.gdc_gcn.GDC_GCN method) (cogdl.models.nn.gin.GIN method) (cogdl.models.nn.grace.GRACE method) (cogdl.models.nn.grand.Grand method) (cogdl.models.nn.graph_unet.GraphUnet method) (cogdl.models.nn.graphsage.Graphsage method) (cogdl.models.nn.gtn.GTN method) (cogdl.models.nn.han.HAN method) (cogdl.models.nn.infograph.InfoGraph method) (cogdl.models.nn.mixhop.MixHop method) (cogdl.models.nn.mlp.MLP method) (cogdl.models.nn.mvgrl.MVGRL method) (cogdl.models.nn.patchy_san.PatchySAN method) (cogdl.models.nn.ppnp.PPNP method) (cogdl.models.nn.pprgo.PPRGo method) (cogdl.models.nn.rgcn.LinkPredictRGCN method) (cogdl.models.nn.sgc.sgc method) (cogdl.models.nn.sign.MLP method) (cogdl.models.nn.sortpool.SortPool method) (cogdl.models.nn.srgcn.SRGCN method) (cogdl.utils.link_prediction_utils.ConvELayer method) (cogdl.utils.link_prediction_utils.DistMultLayer method) (cogdl.utils.link_prediction_utils.GNNLinkPredict method) (cogdl.utils.srgcn_utils.ColumnUniform method) (cogdl.utils.srgcn_utils.EdgeAttention method) (cogdl.utils.srgcn_utils.Gaussian method) (cogdl.utils.srgcn_utils.HeatKernel method) (cogdl.utils.srgcn_utils.Identity method) (cogdl.utils.srgcn_utils.NodeAttention method) (cogdl.utils.srgcn_utils.NormIdentity method) (cogdl.utils.srgcn_utils.PPR method) (cogdl.utils.srgcn_utils.RowSoftmax method) (cogdl.utils.srgcn_utils.RowUniform method) (cogdl.utils.srgcn_utils.SymmetryNorm method)

forward_aux() (cogdl.models.nn.gcnmix.GCNMix method) from_data_list() (cogdl.data.Batch static method) from_dict() (cogdl.data.Adjacency static method) (cogdl.data.Graph static method) from_pyg_data() (cogdl.data.Graph static method) FullBatchNodeClfDataWrapper (class in cogdl.wrappers.data_wrapper.node_classification)

G

GAEModelWrapper (class in cogdl.wrappers.model_wrapper.clustering) GAT (class in cogdl.models.nn.gat) GATLayer (class in cogdl.layers.gat_layer) GATNE (class in cogdl.models.emb.gatne) GatneDataset (class in cogdl.datasets.gatne) Gaussian (class in cogdl.utils.prone_utils) (class in cogdl.utils.srgcn_utils) GCCDataset (class in cogdl.datasets.gcc_data) GCCDataWrapper (class in cogdl.wrappers.data_wrapper.pretraining) GCCModelWrapper (class in cogdl.wrappers.model_wrapper.pretraining) GCN (class in cogdl.models.nn.gcn) GCNII (class in cogdl.models.nn.gcnii) GCNIILayer (class in cogdl.layers.gcnii_layer) GCNLayer (class in cogdl.layers.gcn_layer) GCNMix (class in cogdl.models.nn.gcnmix) GCNMixModelWrapper (class in cogdl.wrappers.model_wrapper.node_classification) GDC_GCN (class in cogdl.models.nn.gdc_gcn) ge_step() (cogdl.wrappers.model_wrapper.pretraining.GCCModelWrapper method) ge_wrapper() (cogdl.wrappers.data_wrapper.pretraining.GCCDataWrapper method) gen_variants() (in module cogdl.experiments) GENConv (class in cogdl.layers.deepergcn_layer) generate_normalization() (cogdl.data.Adjacency method) generate_virtual_labels() (cogdl.wrappers.model_wrapper.node_classification.SelfAuxiliaryModelWrapper method) GenerateEmbeddingPipeline (class in cogdl.pipelines) get() (cogdl.data.Dataset method) (cogdl.data.MultiGraphDataset method) (cogdl.datasets.gatne.GatneDataset method) (cogdl.datasets.gcc_data.Edgelist method) (cogdl.datasets.gcc_data.GCCDataset method) (cogdl.datasets.gcc_data.PretrainDataset method) (cogdl.datasets.gtn_data.GTNDataset method) (cogdl.datasets.han_data.HANDataset method) (cogdl.datasets.kg_data.KnowledgeGraphDataset method) (cogdl.datasets.matlab_matrix.MatlabMatrix method) (cogdl.datasets.matlab_matrix.NetworkEmbeddingCMTYDataset method) (cogdl.datasets.ogb.OGBGDataset method) (cogdl.datasets.ogb.OGBLDataset method) (cogdl.datasets.ogb.OGBNDataset method) get_2hop() (cogdl.models.nn.daegc.DAEGC method) get_activation() (in module cogdl.utils.utils) get_cluster_center() (cogdl.models.nn.daegc.DAEGC method) get_dataset() (cogdl.wrappers.data_wrapper.node_classification.M3SDataWrapper method) get_default_args() (in module cogdl.options) get_degrees() (in module cogdl.utils.graph_utils) get_denoised_matrix() (cogdl.models.emb.dngr.DNGR method) get_diff_args() (in module cogdl.options) get_display_data_parser() (in module cogdl.options) get_download_data_parser() (in module cogdl.options) get_edge_set() (cogdl.utils.link_prediction_utils.GNNLinkPredict method) get_edge_split() (cogdl.datasets.ogb.OGBLDataset method) get_emb() (cogdl.models.emb.dngr.DNGR method) get_embedding_dense() (in module cogdl.utils.prone_utils) get_evaluator() (cogdl.data.Dataset method) (cogdl.datasets.gcc_data.PretrainDataset method) (cogdl.datasets.ogb.OGBLDataset method) (cogdl.datasets.ogb.OGBNDataset method) (cogdl.datasets.ogb.OGBProteinsDataset method)

get_features() (cogdl.models.nn.daegc.DAEGC method) get_filtered_rank() (in module cogdl.utils.link_prediction_utils) get_link_labels() (cogdl.wrappers.model_wrapper.link_prediction.GNNLinkPredictionModelWrapper static method) get_loader() (cogdl.datasets.ogb.OGBGDataset method) get_loss_fn() (cogdl.data.Dataset method) (cogdl.datasets.gcc_data.PretrainDataset method) (cogdl.datasets.ogb.OGBLDataset method) (cogdl.datasets.ogb.OGBNDataset method) (cogdl.datasets.ogb.OGBProteinsDataset method) get_memory_usage() (in module cogdl.utils.utils) get_norm_layer() (in module cogdl.utils.utils) get_optimizer() (cogdl.models.nn.gcnii.GCNII method) get_parameters() (cogdl.data.DataLoader method) get_parser() (in module cogdl.options) get_ppmi_matrix() (cogdl.models.emb.dngr.DNGR method) get_rank() (in module cogdl.utils.link_prediction_utils) get_raw_rank() (in module cogdl.utils.link_prediction_utils) get_subset() (cogdl.datasets.ogb.OGBGDataset method) get_train_dataset() (cogdl.wrappers.data_wrapper.node_classification.ClusterWrapper method) (cogdl.wrappers.data_wrapper.node_classification.GraphSAGEDataWrapper method) get_training_parser() (in module cogdl.options) get_true_head_and_tail() (cogdl.datasets.kg_data.TrainDataset static method) get_weight() (cogdl.data.Adjacency method) getP() (cogdl.wrappers.model_wrapper.clustering.DAEGCModelWrapper method) getpid() (in module cogdl.experiments) getQ() (cogdl.wrappers.model_wrapper.clustering.DAEGCModelWrapper method) GIN (class in cogdl.models.nn.gin) GINLayer (class in cogdl.layers.gin_layer) GNNKGLinkPredictionDataWrapper (class in cogdl.wrappers.data_wrapper.link_prediction) GNNKGLinkPredictionModelWrapper (class in cogdl.wrappers.model_wrapper.link_prediction) GNNLinkPredict (class in cogdl.utils.link_prediction_utils) GNNLinkPredictionDataWrapper (class in cogdl.wrappers.data_wrapper.link_prediction) GNNLinkPredictionModelWrapper (class in cogdl.wrappers.model_wrapper.link_prediction) GRACE (class in cogdl.models.nn.grace) GRACEModelWrapper (class in cogdl.wrappers.model_wrapper.node_classification) Grand (class in cogdl.models.nn.grand) GrandModelWrapper (class in cogdl.wrappers.model_wrapper.node_classification) Graph (class in cogdl.data) Graph2Vec (class in cogdl.models.emb.graph2vec) graph_classificatoin_loss() (cogdl.models.nn.diffpool.DiffPool method) GraphClassificationDataWrapper (class in cogdl.wrappers.data_wrapper.graph_classification) GraphClassificationModelWrapper (class in cogdl.wrappers.model_wrapper.graph_classification) GraphEmbeddingDataWrapper (class in cogdl.wrappers.data_wrapper.graph_classification) GraphEmbeddingModelWrapper (class in cogdl.wrappers.model_wrapper.graph_classification) Graphsage (class in cogdl.models.nn.graphsage) GraphSAGEDataWrapper (class in cogdl.wrappers.data_wrapper.node_classification) GraphSAGEModelWrapper (class in cogdl.wrappers.model_wrapper.node_classification) GraphUnet (class in cogdl.models.nn.graph_unet) GraRep (class in cogdl.models.emb.grarep) GTN (class in cogdl.models.nn.gtn) GTNDataset (class in cogdl.datasets.gtn_data)

H

HAN (class in cogdl.models.nn.han) HANDataset (class in cogdl.datasets.han_data) HANLayer (class in cogdl.layers.han_layer) HeatKernel (class in cogdl.utils.prone_utils) (class in cogdl.utils.srgcn_utils) HeatKernelApproximation (class in cogdl.utils.prone_utils)

HeterogeneousEmbeddingDataWrapper (class in cogdl.wrappers.data_wrapper.heterogeneous) HeterogeneousEmbeddingModelWrapper (class in cogdl.wrappers.model_wrapper.heterogeneous) HeterogeneousGNNDataWrapper (class in cogdl.wrappers.data_wrapper.heterogeneous) HeterogeneousGNNModelWrapper (class in cogdl.wrappers.model_wrapper.heterogeneous) Hin2vec (class in cogdl.models.emb.hin2vec) HIndexDataset (class in cogdl.datasets.gcc_data) HOPE (class in cogdl.models.emb.hope)

I

Identity (class in cogdl.utils.srgcn_utils) identity_act() (in module cogdl.utils.utils) IMDB_GCCDataset (class in cogdl.datasets.gcc_data) IMDB_GTNDataset (class in cogdl.datasets.gtn_data) IMDB_HANDataset (class in cogdl.datasets.han_data) ImdbBinaryDataset (class in cogdl.datasets.tu_data) ImdbMultiDataset (class in cogdl.datasets.tu_data)

in_norm (cogdl.data.Graph property) inference() (cogdl.models.nn.graphsage.Graphsage method) InfoGraph (class in cogdl.models.nn.infograph) InfoGraphDataWrapper (class in cogdl.wrappers.data_wrapper.graph_classification) InfoGraphModelWrapper (class in cogdl.wrappers.model_wrapper.graph_classification) is_inductive() (cogdl.data.Graph method) is_symmetric() (cogdl.data.Adjacency method) (cogdl.data.Graph method)

K

KDD_ICDM_GCCDataset (class in cogdl.datasets.gcc_data) keys (cogdl.data.Adjacency property) (cogdl.data.Graph property)

KnowledgeGraphDataset (class in cogdl.datasets.kg_data)

L

len() (cogdl.data.MultiGraphDataset method) LINE (class in cogdl.models.emb.line) LinearLayer (class in cogdl.layers.pprgo_layer) LinkPredictCompGCN (class in cogdl.models.nn.compgcn) LinkPredictRGCN (class in cogdl.models.nn.rgcn)

Livejournal_GCCDataset (class in cogdl.datasets.gcc_data) load_checkpoint() (cogdl.wrappers.model_wrapper.pretraining.GCCModelWrapper method) local_graph() (cogdl.data.Graph method) loss() (cogdl.models.nn.compgcn.LinkPredictCompGCN method) (cogdl.models.nn.mvgrl.MVGRL method) (cogdl.models.nn.rgcn.LinkPredictRGCN method)

M

M3SDataWrapper (class in cogdl.wrappers.data_wrapper.node_classification) M3SModelWrapper (class in cogdl.wrappers.model_wrapper.node_classification) MAE (class in cogdl.utils.evaluator) makedirs() (in module cogdl.utils.utils) mask2nid() (cogdl.data.Graph method) MatlabMatrix (class in cogdl.datasets.matlab_matrix) max_degree (cogdl.data.Dataset property) (cogdl.data.MultiGraphDataset property) max_graph_size (cogdl.data.Dataset property) (cogdl.data.MultiGraphDataset property) MaxAggregator (class in cogdl.layers.sage_layer) MeanAggregator (class in cogdl.layers.sage_layer) message_norm() (cogdl.layers.deepergcn_layer.GENConv method) Metapath2vec (class in cogdl.models.emb.metapath2vec) mi_loss() (cogdl.wrappers.model_wrapper.graph_classification.InfoGraphModelWrapper static method) mini_forward() (cogdl.models.nn.graphsage.Graphsage method) MixHop (class in cogdl.models.nn.mixhop) MixHopLayer (class in cogdl.layers.mixhop_layer) MLP (class in cogdl.layers.mlp_layer) (class in cogdl.models.nn.mlp) (class in cogdl.models.nn.sign) module cogdl.data cogdl.datasets cogdl.datasets.gatne cogdl.datasets.gcc_data cogdl.datasets.gtn_data cogdl.datasets.han_data cogdl.datasets.kg_data cogdl.datasets.matlab_matrix cogdl.datasets.ogb cogdl.datasets.tu_data cogdl.experiments cogdl.layers.deepergcn_layer cogdl.layers.disengcn_layer cogdl.layers.gat_layer cogdl.layers.gcn_layer cogdl.layers.gcnii_layer cogdl.layers.gin_layer cogdl.layers.han_layer cogdl.layers.mixhop_layer cogdl.layers.mlp_layer cogdl.layers.pprgo_layer cogdl.layers.rgcn_layer cogdl.layers.sage_layer cogdl.layers.saint_layer cogdl.layers.se_layer cogdl.layers.sgc_layer cogdl.models cogdl.models.base_model cogdl.options cogdl.pipelines cogdl.utils.evaluator cogdl.utils.graph_utils cogdl.utils.link_prediction_utils cogdl.utils.ppr_utils cogdl.utils.prone_utils cogdl.utils.sampling cogdl.utils.srgcn_utils cogdl.utils.utils

multiclass_f1() (in module cogdl.utils.evaluator) MultiClassMicroF1 (class in cogdl.utils.evaluator) MultiGraphDataset (class in cogdl.data) multilabel_f1() (in module cogdl.utils.evaluator) MultiLabelMicroF1 (class in cogdl.utils.evaluator) MultiplexEmbeddingDataWrapper (class in cogdl.wrappers.data_wrapper.heterogeneous) MultiplexEmbeddingModelWrapper (class in cogdl.wrappers.model_wrapper.heterogeneous) MUTAGDataset (class in cogdl.datasets.tu_data) MVGRL (class in cogdl.models.nn.mvgrl) MVGRLModelWrapper (class in cogdl.wrappers.model_wrapper.node_classification)

N

NCI109Dataset (class in cogdl.datasets.tu_data) NCI1Dataset (class in cogdl.datasets.tu_data) negative_edge_sampling() (in module cogdl.utils.graph_utils) NetMF (class in cogdl.models.emb.netmf) NetSMF (class in cogdl.models.emb.netsmf) NetworkEmbeddingCMTYDataset (class in cogdl.datasets.matlab_matrix) NetworkEmbeddingDataWrapper (class in cogdl.wrappers.data_wrapper.node_classification) NetworkEmbeddingModelWrapper (class in cogdl.wrappers.model_wrapper.node_classification) Node2vec (class in cogdl.models.emb.node2vec) NodeAdaptiveEncoder (class in cogdl.utils.prone_utils) NodeAttention (class in cogdl.utils.srgcn_utils) NodeClfModelWrapper (class in cogdl.wrappers.model_wrapper.node_classification) nodes() (cogdl.data.Graph method) norm() (cogdl.models.nn.gtn.GTN method) normalization() (cogdl.models.nn.gtn.GTN method) normalize() (cogdl.data.Graph method) normalize_adj() (cogdl.data.Adjacency method) normalize_feature() (in module cogdl.datasets.tu_data) normalize_x() (cogdl.models.nn.grand.Grand method) NormIdentity (class in cogdl.utils.srgcn_utils) num_classes (cogdl.data.Dataset property) (cogdl.data.Graph property) (cogdl.data.MultiGraphDataset property) (cogdl.datasets.gcc_data.Edgelist property) (cogdl.datasets.gtn_data.GTNDataset property) (cogdl.datasets.han_data.HANDataset property) (cogdl.datasets.matlab_matrix.MatlabMatrix property) (cogdl.datasets.matlab_matrix.NetworkEmbeddingCMTYDataset property) (cogdl.datasets.ogb.OGBGDataset property) (cogdl.datasets.tu_data.TUDataset property)

num_edge_attributes() (in module cogdl.datasets.tu_data) num_edge_labels() (in module cogdl.datasets.tu_data) num_edges (cogdl.data.Adjacency property) (cogdl.data.Graph property) num_entities (cogdl.datasets.kg_data.KnowledgeGraphDataset property) num_features (cogdl.data.Dataset property) (cogdl.data.Graph property) (cogdl.data.MultiGraphDataset property) (cogdl.datasets.gcc_data.PretrainDataset property) num_graphs (cogdl.data.Batch property) (cogdl.data.Dataset property) (cogdl.data.MultiGraphDataset property) num_node_attributes() (in module cogdl.datasets.tu_data) num_node_labels() (in module cogdl.datasets.tu_data) num_nodes (cogdl.data.Adjacency property) (cogdl.data.Graph property) (cogdl.datasets.matlab_matrix.MatlabMatrix property) (cogdl.datasets.matlab_matrix.NetworkEmbeddingCMTYDataset property) num_relations (cogdl.datasets.kg_data.KnowledgeGraphDataset property) num_workers (cogdl.data.DataLoader attribute)

O

OAGBertInferencePipepline (class in cogdl.pipelines) OGBArxivDataset (class in cogdl.datasets.ogb) OGBCodeDataset (class in cogdl.datasets.ogb) OGBGDataset (class in cogdl.datasets.ogb) OGBLCitation2Dataset (class in cogdl.datasets.ogb) OGBLCollabDataset (class in cogdl.datasets.ogb) OGBLDataset (class in cogdl.datasets.ogb) OGBLDdiDataset (class in cogdl.datasets.ogb) OGBLPpaDataset (class in cogdl.datasets.ogb) OGBMolbaceDataset (class in cogdl.datasets.ogb)

OGBMolhivDataset (class in cogdl.datasets.ogb) OGBMolpcbaDataset (class in cogdl.datasets.ogb) OGBNDataset (class in cogdl.datasets.ogb) OGBPapers100MDataset (class in cogdl.datasets.ogb) OGBPpaDataset (class in cogdl.datasets.ogb) OGBProductsDataset (class in cogdl.datasets.ogb) OGBProteinsDataset (class in cogdl.datasets.ogb) one_shot_iterator() (cogdl.datasets.kg_data.BidirectionalOneShotIterator static method) out_norm (cogdl.data.Graph property) output_results() (in module cogdl.experiments)

P

padding_self_loops() (cogdl.data.Adjacency method) (cogdl.data.Graph method) parse_args_and_arch() (in module cogdl.options) parse_txt_array() (in module cogdl.datasets.tu_data) PATCHY_SAN_DataWrapper (class in cogdl.wrappers.data_wrapper.graph_classification) PatchySAN (class in cogdl.models.nn.patchy_san) pin_memory (cogdl.data.DataLoader attribute) Pipeline (class in cogdl.pipelines) pipeline() (in module cogdl.pipelines) post_stage() (cogdl.wrappers.data_wrapper.node_classification.M3SDataWrapper method) (cogdl.wrappers.model_wrapper.clustering.DAEGCModelWrapper method) (cogdl.wrappers.model_wrapper.pretraining.GCCModelWrapper method) post_stage_wrapper() (cogdl.wrappers.data_wrapper.node_classification.SAGNDataWrapper method) PPIDataset (class in cogdl.datasets.matlab_matrix) PPNP (class in cogdl.models.nn.ppnp) PPR (class in cogdl.utils.prone_utils) (class in cogdl.utils.srgcn_utils) ppr_topk() (in module cogdl.utils.ppr_utils) PPRGo (class in cogdl.models.nn.pprgo) PPRGoDataWrapper (class in cogdl.wrappers.data_wrapper.node_classification) PPRGoLayer (class in cogdl.layers.pprgo_layer) PPRGoModelWrapper (class in cogdl.wrappers.model_wrapper.node_classification) pre_stage() (cogdl.wrappers.data_wrapper.node_classification.M3SDataWrapper method) (cogdl.wrappers.data_wrapper.node_classification.SAGNDataWrapper method) (cogdl.wrappers.model_wrapper.clustering.DAEGCModelWrapper method) (cogdl.wrappers.model_wrapper.clustering.GAEModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.M3SModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.SAGNModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.SelfAuxiliaryModelWrapper method) (cogdl.wrappers.model_wrapper.pretraining.GCCModelWrapper method) pre_stage_transform() (cogdl.wrappers.data_wrapper.node_classification.SAGNDataWrapper method) pre_transform() (cogdl.wrappers.data_wrapper.graph_classification.GraphEmbeddingDataWrapper method) (cogdl.wrappers.data_wrapper.graph_classification.PATCHY_SAN_DataWrapper method) (cogdl.wrappers.data_wrapper.link_prediction.EmbeddingLinkPredictionDataWrapper method) (cogdl.wrappers.data_wrapper.link_prediction.GNNLinkPredictionDataWrapper method) (cogdl.wrappers.data_wrapper.node_classification.FullBatchNodeClfDataWrapper method) (cogdl.wrappers.data_wrapper.node_classification.M3SDataWrapper method) (cogdl.wrappers.data_wrapper.node_classification.SAGNDataWrapper method) predict() (cogdl.models.base_model.BaseModel method) (cogdl.models.nn.compgcn.LinkPredictCompGCN method) (cogdl.models.nn.deepergcn.DeeperGCN method) (cogdl.models.nn.disengcn.DisenGCN method) (cogdl.models.nn.drgcn.DrGCN method) (cogdl.models.nn.dropedge_gcn.DropEdge_GCN method) (cogdl.models.nn.gat.GAT method) (cogdl.models.nn.gcnii.GCNII method) (cogdl.models.nn.gdc_gcn.GDC_GCN method) (cogdl.models.nn.grand.Grand method) (cogdl.models.nn.mixhop.MixHop method) (cogdl.models.nn.mlp.MLP method) (cogdl.models.nn.ppnp.PPNP method) (cogdl.models.nn.pprgo.PPRGo method) (cogdl.models.nn.rgcn.LinkPredictRGCN method) (cogdl.models.nn.sgc.sgc method) (cogdl.models.nn.sign.MLP method) (cogdl.models.nn.srgcn.SRGCN method) (cogdl.utils.link_prediction_utils.ConvELayer method) (cogdl.utils.link_prediction_utils.DistMultLayer method)

predict_noise() (cogdl.models.nn.gcnmix.GCNMix method) prefetch_factor (cogdl.data.DataLoader attribute) preprocess() (cogdl.datasets.gcc_data.GCCDataset method) (cogdl.models.nn.mvgrl.MVGRL method) preprocessing() (cogdl.models.nn.gdc_gcn.GDC_GCN method) PretrainDataset (class in cogdl.datasets.gcc_data) PretrainDataset.DataList (class in cogdl.datasets.gcc_data) print_result() (in module cogdl.utils.utils) process() (cogdl.data.Dataset method) (cogdl.datasets.gatne.GatneDataset method) (cogdl.datasets.gcc_data.Edgelist method) (cogdl.datasets.gtn_data.GTNDataset method) (cogdl.datasets.han_data.HANDataset method) (cogdl.datasets.kg_data.KnowledgeGraphDataset method) (cogdl.datasets.matlab_matrix.MatlabMatrix method) (cogdl.datasets.matlab_matrix.NetworkEmbeddingCMTYDataset method) (cogdl.datasets.ogb.OGBNDataset method) (cogdl.datasets.ogb.OGBProteinsDataset method) (cogdl.datasets.tu_data.TUDataset method) processed_file_names (cogdl.data.Dataset property) (cogdl.datasets.gatne.GatneDataset property) (cogdl.datasets.gcc_data.Edgelist property) (cogdl.datasets.gcc_data.GCCDataset property) (cogdl.datasets.gtn_data.GTNDataset property) (cogdl.datasets.han_data.HANDataset property) (cogdl.datasets.kg_data.KnowledgeGraphDataset property) (cogdl.datasets.matlab_matrix.MatlabMatrix property) (cogdl.datasets.matlab_matrix.NetworkEmbeddingCMTYDataset property) (cogdl.datasets.ogb.OGBLDataset property) (cogdl.datasets.ogb.OGBNDataset property) (cogdl.datasets.tu_data.TUDataset property) processed_paths (cogdl.data.Dataset property) ProNE (class in cogdl.models.emb.prone) (class in cogdl.utils.prone_utils) ProNEPP (class in cogdl.models.emb.pronepp) prop() (cogdl.utils.prone_utils.Gaussian method) (cogdl.utils.prone_utils.HeatKernel method) (cogdl.utils.prone_utils.HeatKernelApproximation method) (cogdl.utils.prone_utils.NodeAdaptiveEncoder static method) (cogdl.utils.prone_utils.PPR method) (cogdl.utils.prone_utils.SignalRescaling method) (cogdl.wrappers.model_wrapper.node_classification.GRACEModelWrapper method) prop_adjacency() (cogdl.utils.prone_utils.HeatKernel method) propagate() (in module cogdl.utils.prone_utils) ProteinsDataset (class in cogdl.datasets.tu_data) PTCMRDataset (class in cogdl.datasets.tu_data) PTE (class in cogdl.models.emb.pte)

R

rand_prop() (cogdl.models.nn.grand.Grand method) random_surfing() (cogdl.models.emb.dngr.DNGR method) random_walk() (cogdl.data.Adjacency method) (cogdl.data.Graph method) random_walk_parallel() (in module cogdl.utils.sampling) random_walk_single() (in module cogdl.utils.sampling) random_walk_with_restart() (cogdl.data.Graph method) RandomWalker (class in cogdl.utils.sampling) raw_edge_weight (cogdl.data.Graph property) raw_experiment() (in module cogdl.experiments) raw_file_names (cogdl.data.Dataset property) (cogdl.datasets.gatne.GatneDataset property) (cogdl.datasets.gcc_data.Edgelist property) (cogdl.datasets.gcc_data.GCCDataset property) (cogdl.datasets.gtn_data.GTNDataset property) (cogdl.datasets.han_data.HANDataset property) (cogdl.datasets.kg_data.KnowledgeGraphDataset property) (cogdl.datasets.matlab_matrix.MatlabMatrix property) (cogdl.datasets.matlab_matrix.NetworkEmbeddingCMTYDataset property) (cogdl.datasets.tu_data.TUDataset property) raw_paths (cogdl.data.Dataset property) read_file() (in module cogdl.datasets.tu_data) read_gatne_data() (in module cogdl.datasets.gatne) read_gtn_data() (cogdl.datasets.gtn_data.GTNDataset method) (cogdl.datasets.han_data.HANDataset method) read_triplet_data() (in module cogdl.datasets.kg_data) read_tu_data() (in module cogdl.datasets.tu_data) read_txt_array() (in module cogdl.datasets.tu_data) RecommendationPipepline (class in cogdl.pipelines) recon_loss() (cogdl.models.nn.daegc.DAEGC method) (cogdl.wrappers.model_wrapper.clustering.DAEGCModelWrapper method) record_parameters() (cogdl.data.DataLoader method)

RedditBinary (class in cogdl.datasets.tu_data) RedditMulti12K (class in cogdl.datasets.tu_data) RedditMulti5K (class in cogdl.datasets.tu_data) register_dataset() (in module cogdl.datasets) register_model() (in module cogdl.models) remove_self_loops() (cogdl.data.Adjacency method) (cogdl.data.Graph method) (in module cogdl.utils.graph_utils) reset_data() (cogdl.models.nn.gdc_gcn.GDC_GCN method) reset_parameters() (cogdl.layers.disengcn_layer.DisenGCNLayer method) (cogdl.layers.gat_layer.GATLayer method) (cogdl.layers.gcn_layer.GCNLayer method) (cogdl.layers.gcnii_layer.GCNIILayer method) (cogdl.layers.mixhop_layer.MixHopLayer method) (cogdl.layers.mlp_layer.MLP method) (cogdl.layers.pprgo_layer.LinearLayer method) (cogdl.layers.rgcn_layer.RGCNLayer method) (cogdl.models.nn.diffpool.DiffPool method) (cogdl.models.nn.disengcn.DisenGCN method) (cogdl.models.nn.dropedge_gcn.DropEdge_GCN method) (cogdl.models.nn.infograph.InfoGraph method) ResGNNLayer (class in cogdl.layers.deepergcn_layer) restore() (cogdl.data.Graph method) RGCNLayer (class in cogdl.layers.rgcn_layer) row_indptr (cogdl.data.Adjacency property) (cogdl.data.Graph property) row_norm() (cogdl.data.Adjacency method) (cogdl.data.Graph method) row_normalization() (in module cogdl.utils.graph_utils) row_ptr_v (cogdl.data.Adjacency property) RowSoftmax (class in cogdl.utils.srgcn_utils) RowUniform (class in cogdl.utils.srgcn_utils) run() (cogdl.experiments.AutoML method)

S

SAGELayer (class in cogdl.layers.sage_layer) SAGNDataWrapper (class in cogdl.wrappers.data_wrapper.node_classification) SAGNModelWrapper (class in cogdl.wrappers.model_wrapper.node_classification) SAINTLayer (class in cogdl.layers.saint_layer) sample_adj() (cogdl.data.Graph method) sample_mask() (in module cogdl.datasets.han_data) sampler (cogdl.data.DataLoader attribute) sampling() (cogdl.models.nn.graphsage.Graphsage method) sampling_edge_uniform() (in module cogdl.utils.link_prediction_utils) save_checkpoint() (cogdl.wrappers.model_wrapper.pretraining.GCCModelWrapper method) save_embedding() (cogdl.models.emb.dgk.DeepGraphKernel method) (cogdl.models.emb.graph2vec.Graph2Vec method) scale_matrix() (cogdl.models.emb.dngr.DNGR method) SDNE (class in cogdl.models.emb.sdne) segment() (in module cogdl.datasets.tu_data) SELayer (class in cogdl.layers.se_layer) SelfAuxiliaryModelWrapper (class in cogdl.wrappers.model_wrapper.node_classification) set_asymmetric() (cogdl.data.Graph method) set_best_config() (in module cogdl.experiments) set_cluster_center() (cogdl.models.nn.daegc.DAEGC method) set_early_stopping() (cogdl.wrappers.model_wrapper.link_prediction.GNNKGLinkPredictionModelWrapper method) (cogdl.wrappers.model_wrapper.link_prediction.GNNLinkPredictionModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.NodeClfModelWrapper method) set_grb_adj() (cogdl.data.Graph method) set_loss_fn() (cogdl.models.base_model.BaseModel method) set_random_seed() (in module cogdl.utils.utils) set_symmetric() (cogdl.data.Adjacency method) (cogdl.data.Graph method) set_weight() (cogdl.data.Adjacency method) setup_evaluator() (in module cogdl.utils.evaluator) setup_node_features() (cogdl.wrappers.data_wrapper.graph_classification.GraphClassificationDataWrapper method) setup_optimizer() (cogdl.wrappers.model_wrapper.clustering.DAEGCModelWrapper method) (cogdl.wrappers.model_wrapper.clustering.GAEModelWrapper method) (cogdl.wrappers.model_wrapper.graph_classification.GraphClassificationModelWrapper method) (cogdl.wrappers.model_wrapper.graph_classification.InfoGraphModelWrapper method) (cogdl.wrappers.model_wrapper.heterogeneous.HeterogeneousGNNModelWrapper method) (cogdl.wrappers.model_wrapper.link_prediction.GNNKGLinkPredictionModelWrapper method) (cogdl.wrappers.model_wrapper.link_prediction.GNNLinkPredictionModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.DGIModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.GCNMixModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.GRACEModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.GraphSAGEModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.MVGRLModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.NodeClfModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.PPRGoModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.SAGNModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.SelfAuxiliaryModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.UnsupGraphSAGEModelWrapper method) (cogdl.wrappers.model_wrapper.pretraining.GCCModelWrapper method)

sgc (class in cogdl.models.nn.sgc) SGCLayer (class in cogdl.layers.sgc_layer) SIGIR_CIKM_GCCDataset (class in cogdl.datasets.gcc_data) SIGMOD_ICDE_GCCDataset (class in cogdl.datasets.gcc_data) SignalRescaling (class in cogdl.utils.prone_utils) sorted_coo2csr() (in module cogdl.utils.graph_utils) SortPool (class in cogdl.models.nn.sortpool) Spectral (class in cogdl.models.emb.spectral) split_dataset() (cogdl.models.nn.diffpool.DiffPool class method) (cogdl.models.nn.gin.GIN class method) (cogdl.models.nn.infograph.InfoGraph class method) (cogdl.models.nn.patchy_san.PatchySAN class method) (cogdl.models.nn.sortpool.SortPool class method) split_dataset_general() (in module cogdl.utils.utils) SRGCN (class in cogdl.models.nn.srgcn) store() (cogdl.data.Graph method) subgraph() (cogdl.data.Graph method) SumAggregator (class in cogdl.layers.sage_layer) sup_forward() (cogdl.models.nn.infograph.InfoGraph method) sup_loss() (cogdl.wrappers.model_wrapper.graph_classification.InfoGraphModelWrapper method) sym_norm() (cogdl.data.Adjacency method) (cogdl.data.Graph method) symmetric_normalization() (in module cogdl.utils.graph_utils) SymmetryNorm (class in cogdl.utils.srgcn_utils)

T

tabulate_results() (in module cogdl.utils.utils) taylor() (cogdl.utils.prone_utils.HeatKernelApproximation method) test_nid (cogdl.data.Graph property) test_start_idx (cogdl.datasets.kg_data.KnowledgeGraphDataset property) test_step() (cogdl.wrappers.model_wrapper.clustering.AGCModelWrapper method) (cogdl.wrappers.model_wrapper.clustering.DAEGCModelWrapper method) (cogdl.wrappers.model_wrapper.clustering.GAEModelWrapper method) (cogdl.wrappers.model_wrapper.graph_classification.GraphClassificationModelWrapper method) (cogdl.wrappers.model_wrapper.graph_classification.GraphEmbeddingModelWrapper method) (cogdl.wrappers.model_wrapper.graph_classification.InfoGraphModelWrapper method) (cogdl.wrappers.model_wrapper.heterogeneous.HeterogeneousEmbeddingModelWrapper method) (cogdl.wrappers.model_wrapper.heterogeneous.HeterogeneousGNNModelWrapper method) (cogdl.wrappers.model_wrapper.heterogeneous.MultiplexEmbeddingModelWrapper method) (cogdl.wrappers.model_wrapper.link_prediction.EmbeddingLinkPredictionModelWrapper method) (cogdl.wrappers.model_wrapper.link_prediction.GNNKGLinkPredictionModelWrapper method) (cogdl.wrappers.model_wrapper.link_prediction.GNNLinkPredictionModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.CorrectSmoothModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.DGIModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.GCNMixModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.GRACEModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.GraphSAGEModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.MVGRLModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.NetworkEmbeddingModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.NodeClfModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.PPRGoModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.SAGNModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.SelfAuxiliaryModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.UnsupGraphSAGEModelWrapper method) (cogdl.wrappers.model_wrapper.pretraining.GCCModelWrapper method) test_transform() (cogdl.wrappers.data_wrapper.node_classification.SAGNDataWrapper method) test_wrapper() (cogdl.wrappers.data_wrapper.graph_classification.GraphClassificationDataWrapper method) (cogdl.wrappers.data_wrapper.graph_classification.GraphEmbeddingDataWrapper method) (cogdl.wrappers.data_wrapper.graph_classification.InfoGraphDataWrapper method) (cogdl.wrappers.data_wrapper.heterogeneous.HeterogeneousEmbeddingDataWrapper method) (cogdl.wrappers.data_wrapper.heterogeneous.HeterogeneousGNNDataWrapper method) (cogdl.wrappers.data_wrapper.heterogeneous.MultiplexEmbeddingDataWrapper method) (cogdl.wrappers.data_wrapper.link_prediction.EmbeddingLinkPredictionDataWrapper method) (cogdl.wrappers.data_wrapper.link_prediction.GNNKGLinkPredictionDataWrapper method) (cogdl.wrappers.data_wrapper.link_prediction.GNNLinkPredictionDataWrapper method) (cogdl.wrappers.data_wrapper.node_classification.ClusterWrapper method) (cogdl.wrappers.data_wrapper.node_classification.FullBatchNodeClfDataWrapper method) (cogdl.wrappers.data_wrapper.node_classification.GraphSAGEDataWrapper method) (cogdl.wrappers.data_wrapper.node_classification.NetworkEmbeddingDataWrapper method) (cogdl.wrappers.data_wrapper.node_classification.PPRGoDataWrapper method) (cogdl.wrappers.data_wrapper.node_classification.SAGNDataWrapper method) (cogdl.wrappers.data_wrapper.pretraining.GCCDataWrapper method) TestDataset (class in cogdl.datasets.kg_data) timeout (cogdl.data.DataLoader attribute) to() (cogdl.datasets.gcc_data.PretrainDataset.DataList method) to_networkx() (cogdl.data.Adjacency method) (cogdl.data.Graph method) to_scipy_csr() (cogdl.data.Adjacency method) (cogdl.data.Graph method) to_undirected() (in module cogdl.utils.graph_utils) topk_ppr_matrix() (in module cogdl.utils.ppr_utils) train() (cogdl.data.Graph method) (cogdl.datasets.gcc_data.PretrainDataset.DataList method) (in module cogdl.experiments) train_nid (cogdl.data.Graph property) train_parallel() (in module cogdl.experiments) train_start_idx (cogdl.datasets.kg_data.KnowledgeGraphDataset property) train_step() (cogdl.wrappers.model_wrapper.clustering.AGCModelWrapper method) (cogdl.wrappers.model_wrapper.clustering.DAEGCModelWrapper method) (cogdl.wrappers.model_wrapper.clustering.GAEModelWrapper method) (cogdl.wrappers.model_wrapper.graph_classification.GraphClassificationModelWrapper method) (cogdl.wrappers.model_wrapper.graph_classification.GraphEmbeddingModelWrapper method) (cogdl.wrappers.model_wrapper.graph_classification.InfoGraphModelWrapper method) (cogdl.wrappers.model_wrapper.heterogeneous.HeterogeneousEmbeddingModelWrapper method) (cogdl.wrappers.model_wrapper.heterogeneous.HeterogeneousGNNModelWrapper method) (cogdl.wrappers.model_wrapper.heterogeneous.MultiplexEmbeddingModelWrapper method) (cogdl.wrappers.model_wrapper.link_prediction.EmbeddingLinkPredictionModelWrapper method) (cogdl.wrappers.model_wrapper.link_prediction.GNNKGLinkPredictionModelWrapper method) (cogdl.wrappers.model_wrapper.link_prediction.GNNLinkPredictionModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.DGIModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.GCNMixModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.GRACEModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.GrandModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.GraphSAGEModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.MVGRLModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.NetworkEmbeddingModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.NodeClfModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.PPRGoModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.SAGNModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.SelfAuxiliaryModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.UnsupGraphSAGEModelWrapper method) (cogdl.wrappers.model_wrapper.pretraining.GCCModelWrapper method) train_step_finetune() (cogdl.wrappers.model_wrapper.pretraining.GCCModelWrapper method) train_step_pretraining() (cogdl.wrappers.model_wrapper.pretraining.GCCModelWrapper method) train_test_edge_split() (cogdl.wrappers.data_wrapper.link_prediction.GNNLinkPredictionDataWrapper static method) train_transform() (cogdl.wrappers.data_wrapper.node_classification.GraphSAGEDataWrapper method) (cogdl.wrappers.data_wrapper.node_classification.SAGNDataWrapper method) train_wrapper() (cogdl.wrappers.data_wrapper.graph_classification.GraphClassificationDataWrapper method) (cogdl.wrappers.data_wrapper.graph_classification.GraphEmbeddingDataWrapper method) (cogdl.wrappers.data_wrapper.heterogeneous.HeterogeneousEmbeddingDataWrapper method) (cogdl.wrappers.data_wrapper.heterogeneous.HeterogeneousGNNDataWrapper method) (cogdl.wrappers.data_wrapper.heterogeneous.MultiplexEmbeddingDataWrapper method) (cogdl.wrappers.data_wrapper.link_prediction.EmbeddingLinkPredictionDataWrapper method) (cogdl.wrappers.data_wrapper.link_prediction.GNNKGLinkPredictionDataWrapper method) (cogdl.wrappers.data_wrapper.link_prediction.GNNLinkPredictionDataWrapper method) (cogdl.wrappers.data_wrapper.node_classification.ClusterWrapper method) (cogdl.wrappers.data_wrapper.node_classification.FullBatchNodeClfDataWrapper method) (cogdl.wrappers.data_wrapper.node_classification.GraphSAGEDataWrapper method) (cogdl.wrappers.data_wrapper.node_classification.NetworkEmbeddingDataWrapper method) (cogdl.wrappers.data_wrapper.node_classification.PPRGoDataWrapper method) (cogdl.wrappers.data_wrapper.node_classification.SAGNDataWrapper method) (cogdl.wrappers.data_wrapper.pretraining.GCCDataWrapper method) TrainDataset (class in cogdl.datasets.kg_data) training (cogdl.layers.deepergcn_layer.BondEncoder attribute) (cogdl.layers.deepergcn_layer.EdgeEncoder attribute) (cogdl.layers.deepergcn_layer.GENConv attribute) (cogdl.layers.deepergcn_layer.ResGNNLayer attribute) (cogdl.layers.disengcn_layer.DisenGCNLayer attribute) (cogdl.layers.gat_layer.GATLayer attribute) (cogdl.layers.gcn_layer.GCNLayer attribute) (cogdl.layers.gcnii_layer.GCNIILayer attribute) (cogdl.layers.gin_layer.GINLayer attribute) (cogdl.layers.han_layer.AttentionLayer attribute) (cogdl.layers.han_layer.HANLayer attribute) (cogdl.layers.mixhop_layer.MixHopLayer attribute) (cogdl.layers.mlp_layer.MLP attribute) (cogdl.layers.pprgo_layer.LinearLayer attribute) (cogdl.layers.pprgo_layer.PPRGoLayer attribute) (cogdl.layers.rgcn_layer.RGCNLayer attribute) (cogdl.layers.sage_layer.SAGELayer attribute) (cogdl.layers.saint_layer.SAINTLayer attribute) (cogdl.layers.se_layer.SELayer attribute) (cogdl.layers.sgc_layer.SGCLayer attribute) (cogdl.models.base_model.BaseModel attribute) (cogdl.models.emb.deepwalk.DeepWalk attribute) (cogdl.models.emb.dgk.DeepGraphKernel attribute) (cogdl.models.emb.dngr.DNGR attribute) (cogdl.models.emb.gatne.GATNE attribute) (cogdl.models.emb.graph2vec.Graph2Vec attribute) (cogdl.models.emb.grarep.GraRep attribute) (cogdl.models.emb.hin2vec.Hin2vec attribute) (cogdl.models.emb.hope.HOPE attribute) (cogdl.models.emb.line.LINE attribute) (cogdl.models.emb.metapath2vec.Metapath2vec attribute) (cogdl.models.emb.netmf.NetMF attribute) (cogdl.models.emb.netsmf.NetSMF attribute) (cogdl.models.emb.node2vec.Node2vec attribute) (cogdl.models.emb.prone.ProNE attribute) (cogdl.models.emb.pronepp.ProNEPP attribute) (cogdl.models.emb.pte.PTE attribute) (cogdl.models.emb.sdne.SDNE attribute) (cogdl.models.emb.spectral.Spectral attribute) (cogdl.models.nn.agc.AGC attribute) (cogdl.models.nn.compgcn.LinkPredictCompGCN attribute) (cogdl.models.nn.daegc.DAEGC attribute) (cogdl.models.nn.deepergcn.DeeperGCN attribute) (cogdl.models.nn.dgi.DGIModel attribute) (cogdl.models.nn.diffpool.DiffPool attribute) (cogdl.models.nn.disengcn.DisenGCN attribute) (cogdl.models.nn.drgat.DrGAT attribute) (cogdl.models.nn.drgcn.DrGCN attribute) (cogdl.models.nn.dropedge_gcn.DropEdge_GCN attribute) (cogdl.models.nn.gat.GAT attribute) (cogdl.models.nn.gcn.GCN attribute) (cogdl.models.nn.gcnii.GCNII attribute) (cogdl.models.nn.gcnmix.GCNMix attribute) (cogdl.models.nn.gdc_gcn.GDC_GCN attribute) (cogdl.models.nn.gin.GIN attribute) (cogdl.models.nn.grace.GRACE attribute) (cogdl.models.nn.grand.Grand attribute) (cogdl.models.nn.graph_unet.GraphUnet attribute) (cogdl.models.nn.graphsage.Graphsage attribute) (cogdl.models.nn.gtn.GTN attribute) (cogdl.models.nn.han.HAN attribute) (cogdl.models.nn.infograph.InfoGraph attribute) (cogdl.models.nn.mixhop.MixHop attribute) (cogdl.models.nn.mlp.MLP attribute) (cogdl.models.nn.mvgrl.MVGRL attribute) (cogdl.models.nn.patchy_san.PatchySAN attribute) (cogdl.models.nn.ppnp.PPNP attribute) (cogdl.models.nn.pprgo.PPRGo attribute) (cogdl.models.nn.rgcn.LinkPredictRGCN attribute) (cogdl.models.nn.sgc.sgc attribute) (cogdl.models.nn.sign.MLP attribute) (cogdl.models.nn.sortpool.SortPool attribute) (cogdl.models.nn.srgcn.SRGCN attribute) (cogdl.utils.evaluator.BCEWithLogitsLoss attribute) (cogdl.utils.evaluator.CrossEntropyLoss attribute) (cogdl.utils.link_prediction_utils.ConvELayer attribute) (cogdl.utils.link_prediction_utils.DistMultLayer attribute) (cogdl.utils.link_prediction_utils.GNNLinkPredict attribute) (cogdl.utils.srgcn_utils.ColumnUniform attribute) (cogdl.utils.srgcn_utils.EdgeAttention attribute) (cogdl.utils.srgcn_utils.Gaussian attribute) (cogdl.utils.srgcn_utils.HeatKernel attribute) (cogdl.utils.srgcn_utils.Identity attribute) (cogdl.utils.srgcn_utils.NodeAttention attribute) (cogdl.utils.srgcn_utils.NormIdentity attribute) (cogdl.utils.srgcn_utils.PPR attribute) (cogdl.utils.srgcn_utils.RowSoftmax attribute) (cogdl.utils.srgcn_utils.RowUniform attribute) (cogdl.utils.srgcn_utils.SymmetryNorm attribute) (cogdl.wrappers.model_wrapper.clustering.AGCModelWrapper attribute) (cogdl.wrappers.model_wrapper.clustering.DAEGCModelWrapper attribute) (cogdl.wrappers.model_wrapper.clustering.GAEModelWrapper attribute) (cogdl.wrappers.model_wrapper.graph_classification.GraphClassificationModelWrapper attribute) (cogdl.wrappers.model_wrapper.graph_classification.GraphEmbeddingModelWrapper attribute) (cogdl.wrappers.model_wrapper.graph_classification.InfoGraphModelWrapper attribute) (cogdl.wrappers.model_wrapper.heterogeneous.HeterogeneousEmbeddingModelWrapper attribute) (cogdl.wrappers.model_wrapper.heterogeneous.HeterogeneousGNNModelWrapper attribute) (cogdl.wrappers.model_wrapper.heterogeneous.MultiplexEmbeddingModelWrapper attribute) (cogdl.wrappers.model_wrapper.link_prediction.EmbeddingLinkPredictionModelWrapper attribute) (cogdl.wrappers.model_wrapper.link_prediction.GNNKGLinkPredictionModelWrapper attribute) (cogdl.wrappers.model_wrapper.link_prediction.GNNLinkPredictionModelWrapper attribute) (cogdl.wrappers.model_wrapper.node_classification.CorrectSmoothModelWrapper attribute) (cogdl.wrappers.model_wrapper.node_classification.DGIModelWrapper attribute) (cogdl.wrappers.model_wrapper.node_classification.GCNMixModelWrapper attribute) (cogdl.wrappers.model_wrapper.node_classification.GRACEModelWrapper attribute) (cogdl.wrappers.model_wrapper.node_classification.GrandModelWrapper attribute) (cogdl.wrappers.model_wrapper.node_classification.GraphSAGEModelWrapper attribute) (cogdl.wrappers.model_wrapper.node_classification.M3SModelWrapper attribute) (cogdl.wrappers.model_wrapper.node_classification.MVGRLModelWrapper attribute) (cogdl.wrappers.model_wrapper.node_classification.NetworkEmbeddingModelWrapper attribute) (cogdl.wrappers.model_wrapper.node_classification.NodeClfModelWrapper attribute) (cogdl.wrappers.model_wrapper.node_classification.PPRGoModelWrapper attribute) (cogdl.wrappers.model_wrapper.node_classification.SAGNModelWrapper attribute) (cogdl.wrappers.model_wrapper.node_classification.SelfAuxiliaryModelWrapper attribute) (cogdl.wrappers.model_wrapper.node_classification.UnsupGraphSAGEModelWrapper attribute) (cogdl.wrappers.model_wrapper.pretraining.GCCModelWrapper attribute)

try_adding_dataset_args() (in module cogdl.datasets) try_adding_model_args() (in module cogdl.models) TUDataset (class in cogdl.datasets.tu_data) TwitterDataset (class in cogdl.datasets.gatne)

U

unsup_forward() (cogdl.models.nn.infograph.InfoGraph method) unsup_loss() (cogdl.wrappers.model_wrapper.graph_classification.InfoGraphModelWrapper method) UnsupGraphSAGEModelWrapper (class in cogdl.wrappers.model_wrapper.node_classification) untar() (in module cogdl.utils.utils) update_args_from_dict() (in module cogdl.utils.utils) update_aux() (cogdl.wrappers.model_wrapper.node_classification.GCNMixModelWrapper method)

update_soft() (cogdl.wrappers.model_wrapper.node_classification.GCNMixModelWrapper method) url (cogdl.datasets.gatne.GatneDataset attribute) (cogdl.datasets.gcc_data.Edgelist attribute) (cogdl.datasets.gcc_data.GCCDataset attribute) (cogdl.datasets.kg_data.KnowledgeGraphDataset attribute) (cogdl.datasets.tu_data.TUDataset attribute) USAAirportDataset (class in cogdl.datasets.gcc_data)

V

val_nid (cogdl.data.Graph property) val_step() (cogdl.wrappers.model_wrapper.graph_classification.GraphClassificationModelWrapper method) (cogdl.wrappers.model_wrapper.heterogeneous.HeterogeneousGNNModelWrapper method) (cogdl.wrappers.model_wrapper.link_prediction.GNNKGLinkPredictionModelWrapper method) (cogdl.wrappers.model_wrapper.link_prediction.GNNLinkPredictionModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.CorrectSmoothModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.GCNMixModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.GraphSAGEModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.NodeClfModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.PPRGoModelWrapper method) (cogdl.wrappers.model_wrapper.node_classification.SAGNModelWrapper method) val_transform() (cogdl.wrappers.data_wrapper.node_classification.GraphSAGEDataWrapper method) (cogdl.wrappers.data_wrapper.node_classification.SAGNDataWrapper method)

val_wrapper() (cogdl.wrappers.data_wrapper.graph_classification.GraphClassificationDataWrapper method) (cogdl.wrappers.data_wrapper.heterogeneous.HeterogeneousGNNDataWrapper method) (cogdl.wrappers.data_wrapper.link_prediction.GNNKGLinkPredictionDataWrapper method) (cogdl.wrappers.data_wrapper.link_prediction.GNNLinkPredictionDataWrapper method) (cogdl.wrappers.data_wrapper.node_classification.ClusterWrapper method) (cogdl.wrappers.data_wrapper.node_classification.FullBatchNodeClfDataWrapper method) (cogdl.wrappers.data_wrapper.node_classification.GraphSAGEDataWrapper method) (cogdl.wrappers.data_wrapper.node_classification.PPRGoDataWrapper method) (cogdl.wrappers.data_wrapper.node_classification.SAGNDataWrapper method) valid_start_idx (cogdl.datasets.kg_data.KnowledgeGraphDataset property) variant_args_generator() (in module cogdl.experiments)

W

walk() (cogdl.utils.sampling.RandomWalker method) walk_one() (cogdl.utils.sampling.RandomWalker method) WikipediaDataset (class in cogdl.datasets.matlab_matrix)

wl_iterations() (cogdl.models.emb.dgk.DeepGraphKernel static method) (cogdl.models.emb.graph2vec.Graph2Vec static method) WN18Datset (class in cogdl.datasets.kg_data) WN18RRDataset (class in cogdl.datasets.kg_data)

Y

YouTubeDataset (class in cogdl.datasets.gatne)

YoutubeNEDataset (class in cogdl.datasets.matlab_matrix)